PhD student (f/m/d) – computational genomics and liquid biopsies

Location: Vienna
Research group:  Sabine Taschner-Mandl Group
Working hours: full-time

Are you looking to apply your bioinformatic skills to patient single cell data and contribute to science that makes a difference? Then this project is for you!

For a recently funded Transcan-3 EU Program, we are looking for a PhD student (f/m/d) in computational biology. In this role, you will work in a leading center for pediatric oncology. You will have the unique opportunity to analyze single-cell omics data and use cutting-edge computational approaches, with the final goal to develop a diagnostic panel for early discovery of relapse in Neuroblastoma, a pediatric cancer.

Your responsibilities

You will:

• Analyze genomics data (*-seq) and identify clinically relevant biological signals
• Contribute to a cross-European research program with a clear and important mission
• Work as part of a dynamic and multi-disciplinary research team and benefit from joint supervision by computational and cancer experts
• Write manuscripts, present at scientific conferences, and attend courses
• Apply for PhD fellowships and learn how to obtain funding for your research

Your profile

What you bring for this position:

• MSc degree (obtained or in final stages) in the areas of bioinformatics, systems biology or cancer genomics (candidates with a degree in computer science will be considered)
• Experience in NGS data analysis (e.g., RNA-seq, ATAC-seq, BS-seq), experience with single-cell RNA/ATAC-seq is a plus
• A sound understanding of statistics
• Solid understanding of molecular, developmental, and cancer biology
• Proficiency in R and/or python are a requirement
• Well-organized team player with proactive “getting things done’’ mentality

Our offer

Does this sound interesting? This is our offer to you:

• A challenging role in a meaningful, inspiring, and international environment
• An outstanding working atmosphere in young and dynamic team funded by a highly prestigious EU program
• Access to state-of-the-art infrastructure and the latest break-through technologies
• Flexible working hours, discounted lunch and other great benefits
• Great location in the center of Vienna, a capital of biomedical research in Europe with excellent quality of life
• An attractive salary package according to the Austrian Science Fund FWF (https://www.fwf.ac.at/en/research-funding/personnel-costs/)

Who we are

The St. Anna Children’s Cancer Research Institute (St. Anna CCRI), located in the center of Vienna, the most livable city in the world and one of the most important sites for biomedical research in Europe. St. Anna CCRI is a multidisciplinary and internationally networked center of excellence whose goal is to contribute to a sustainable improvement in the cure rates of childhood and adolescent cancers through innovative research and development. Due to the close cooperation between clinic and research, St. Anna CCRI offers the ideal environment for cutting-edge research at a high international level and its implementation in clinical practice. and its translation into clinical practice.

St. Anna CCRI is an equal opportunity employer. We value diversity and are committed to providing a work environment of mutual respect to everyone without regard to race, colour, religion, national origin, age, gender identity or expression, disability, or any other characteristic protected by applicable laws, regulations and ordinances.

Find more information here: https://ccri.at/

Your application

We are looking forward to your application! Applications should at least contain your Curriculum Vitae, a cover letter, and the contact details of three references.

The application deadline is the 30.09.2024. Applications will be reviewed on a rolling basis until the position is filled.